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use std::collections::HashMap;
use std::ffi;
use netcdf_sys::*;
use dimension::{init_dimensions, Dimension};
use attribute::{init_attributes, Attribute};
use variable::{init_variable, init_variables, Variable, Numeric};
use string_from_c_str;
use NC_ERRORS;
use std::ptr;
pub struct Group {
pub name : String,
pub id : i32,
pub variables : HashMap<String, Variable>,
pub attributes : HashMap<String, Attribute>,
pub dimensions : HashMap<String, Dimension>,
pub sub_groups : HashMap<String, Group>,
}
pub trait PutVar {
fn get_nc_type(&self) -> i32;
fn put(&self, ncid: i32, varid: i32) -> Result<(), String> ;
fn len(&self) -> usize;
}
macro_rules! impl_putvar {
($type: ty, $nc_type: ident, $nc_put_var: ident) => {
impl PutVar for Vec<$type> {
fn get_nc_type(&self) -> i32 { $nc_type }
fn len(&self) -> usize { self.len() }
fn put(&self, ncid: i32, varid: i32) -> Result<(), String> {
let err : i32;
unsafe {
let _g = libnetcdf_lock.lock().unwrap();
err = $nc_put_var(ncid, varid, self.as_ptr());
}
if err != NC_NOERR {
return Err(NC_ERRORS.get(&err).unwrap().clone());
}
Ok(())
}
}
}
}
impl_putvar!(i8, NC_BYTE, nc_put_var_schar);
impl_putvar!(i16, NC_SHORT, nc_put_var_short);
impl_putvar!(u16, NC_USHORT, nc_put_var_ushort);
impl_putvar!(i32, NC_INT, nc_put_var_int);
impl_putvar!(u32, NC_UINT, nc_put_var_uint);
impl_putvar!(i64, NC_INT64, nc_put_var_longlong);
impl_putvar!(u64, NC_UINT64, nc_put_var_ulonglong);
impl_putvar!(f32, NC_FLOAT, nc_put_var_float);
impl_putvar!(f64, NC_DOUBLE, nc_put_var_double);
pub trait PutAttr {
fn get_nc_type(&self) -> i32;
fn put(&self, ncid: i32, varid: i32, name: &str) -> Result<(), String> ;
}
macro_rules! impl_putattr {
($type: ty, $nc_type: ident, $nc_put_att: ident) => {
impl PutAttr for $type {
fn get_nc_type(&self) -> i32 { $nc_type }
fn put(&self, ncid: i32, varid: i32, name: &str) -> Result<(), String> {
let name_c: ffi::CString = ffi::CString::new(name.clone()).unwrap();
let err : i32;
unsafe {
let _g = libnetcdf_lock.lock().unwrap();
err = $nc_put_att(ncid, varid, name_c.as_ptr(), $nc_type, 1, self);
}
if err != NC_NOERR {
return Err(NC_ERRORS.get(&err).unwrap().clone());
}
Ok(())
}
}
}
}
impl_putattr!(i8, NC_BYTE, nc_put_att_schar);
impl_putattr!(i16, NC_SHORT, nc_put_att_short);
impl_putattr!(u16, NC_USHORT, nc_put_att_ushort);
impl_putattr!(i32, NC_INT, nc_put_att_int);
impl_putattr!(u32, NC_UINT, nc_put_att_uint);
impl_putattr!(i64, NC_INT64, nc_put_att_longlong);
impl_putattr!(u64, NC_UINT64, nc_put_att_ulonglong);
impl_putattr!(f32, NC_FLOAT, nc_put_att_float);
impl_putattr!(f64, NC_DOUBLE, nc_put_att_double);
impl PutAttr for String {
fn get_nc_type(&self) -> i32 { NC_CHAR }
fn put(&self, ncid: i32, varid: i32, name: &str) -> Result<(), String> {
let name_c: ffi::CString = ffi::CString::new(name.clone()).unwrap();
let attr_c: ffi::CString = ffi::CString::new(self.clone()).unwrap();
let err : i32;
unsafe {
let _g = libnetcdf_lock.lock().unwrap();
err = nc_put_att_text(
ncid, varid, name_c.as_ptr(),
attr_c.to_bytes().len() as u64, attr_c.as_ptr());
}
if err != NC_NOERR {
return Err(NC_ERRORS.get(&err).unwrap().clone());
}
Ok(())
}
}
impl Group {
pub fn add_attribute<T: PutAttr>(&mut self, name: &str, val: T)
-> Result<(), String> {
try!(val.put(self.id, NC_GLOBAL, name));
self.attributes.insert(
name.to_string().clone(),
Attribute {
name: name.to_string().clone(),
attrtype: val.get_nc_type(),
id: 0,
var_id: NC_GLOBAL,
file_id: self.id
}
);
Ok(())
}
pub fn add_dimension(&mut self, name: &str, len: u64)
-> Result<(), String> {
let name_c: ffi::CString = ffi::CString::new(name.clone()).unwrap();
let mut dimid: i32 = 0;
let err : i32;
unsafe {
let _g = libnetcdf_lock.lock().unwrap();
err = nc_def_dim(self.id, name_c.as_ptr(), len, &mut dimid);
}
if err != NC_NOERR {
return Err(NC_ERRORS.get(&err).unwrap().clone());
}
self.dimensions.insert(
name.to_string().clone(),
Dimension {
name: name.to_string().clone(),
len: len,
id: dimid
}
);
Ok(())
}
pub fn add_variable<T: PutVar>(&mut self, name: &str, dims: &Vec<String>, data: &T)
-> Result<(), String> {
let nctype: i32 = data.get_nc_type();
let grp_id = self.id;
let var = self.create_variable(name, dims, nctype)?;
data.put(grp_id, var.id)?;
Ok(())
}
pub fn add_variable_with_fill_value<T: PutVar, N: Numeric>(&mut self, name: &str, dims: &Vec<String>, data: &T, fill_value: N)
-> Result<(), String> {
let nctype: i32 = data.get_nc_type();
let grp_id = self.id;
let var = self.create_variable(name, dims, nctype)?;
var.set_fill_value(fill_value)?;
data.put(grp_id, var.id)?;
Ok(())
}
pub fn create_variable(&mut self, name: &str, dims: &Vec<String>, nctype: i32)
-> Result<&mut Variable, String>
{
let name_c: ffi::CString = ffi::CString::new(name.clone()).unwrap();
let mut dimids: Vec<i32> = Vec::with_capacity(dims.len());
let mut var_dims : Vec<Dimension> = Vec::with_capacity(dims.len());
for dim_name in dims {
if !self.dimensions.contains_key(dim_name) {
return Err("Invalid dimension name".to_string());
}
var_dims.push(self.dimensions.get(dim_name).unwrap().clone());
}
for dim in &var_dims {
dimids.push(dim.id);
}
let mut varid: i32 = 0;
let err : i32;
unsafe {
let _g = libnetcdf_lock.lock().unwrap();
err = nc_def_var(self.id, name_c.as_ptr(), nctype,
dims.len() as i32, dimids.as_ptr(), &mut varid);
}
if err != NC_NOERR {
return Err(NC_ERRORS.get(&err).unwrap().clone());
}
init_variable(&mut self.variables, self.id, &mut self.dimensions, varid);
match self.variables.get_mut(name) {
Some(var) => Ok(var),
None => Err("Variable creation failed".into())
}
}
}
fn init_sub_groups(grp_id: i32, sub_groups: &mut HashMap<String, Group>,
parent_dims: &HashMap<String, Dimension>) {
let mut ngrps = 0i32;
let mut grpids : Vec<i32>;
unsafe {
let _g = libnetcdf_lock.lock().unwrap();
let mut err = nc_inq_grps(grp_id, &mut ngrps, ptr::null_mut());
assert_eq!(err, NC_NOERR);
grpids = Vec::with_capacity(ngrps as usize);
grpids.set_len(ngrps as usize);
err = nc_inq_grps(grp_id, &mut ngrps, grpids.as_mut_ptr());
assert_eq!(err, NC_NOERR);
}
for i_grp in 0..ngrps {
let mut namelen = 0u64;
let c_str: &ffi::CStr;
unsafe {
let _g = libnetcdf_lock.lock().unwrap();
let err = nc_inq_grpname_len(grpids[i_grp as usize], &mut namelen);
assert_eq!(err, NC_NOERR);
let mut buf_vec = vec![0i8; (namelen+1) as usize];
let buf_ptr : *mut i8 = buf_vec.as_mut_ptr();
let err = nc_inq_grpname(grpids[i_grp as usize], buf_ptr);
assert_eq!(err, NC_NOERR);
c_str = ffi::CStr::from_ptr(buf_ptr);
}
let str_buf: String = string_from_c_str(c_str);
let mut new_grp = Group {
name: str_buf.clone(),
id: grpids[i_grp as usize],
variables: HashMap::new(),
attributes: HashMap::new(),
dimensions: parent_dims.clone(),
sub_groups: HashMap::new(),
};
init_group(&mut new_grp);
sub_groups.insert(str_buf.clone(), new_grp);
}
}
pub fn init_group(grp: &mut Group) {
init_dimensions(&mut grp.dimensions, grp.id);
init_attributes(&mut grp.attributes, grp.id, NC_GLOBAL, -1);
init_variables(&mut grp.variables, grp.id, &grp.dimensions);
init_sub_groups(grp.id, &mut grp.sub_groups, &grp.dimensions);
}